成果/Result
- PETA: Evaluating the Impact of ProtEIn Transfer Learning with Sub-word Tokenization on Downstream Applications被引量：124收藏
- 作者：Tan, Yang Li, Mingchen Tan, Pan Zhou, Ziyi Yu, Huiqun Fan, Guisheng Hong, Liang
- 机构： School of Information Science and Engineering; Shanghai Artificial Intelligence Laboratory; Shanghai National Center for Applied Mathematics
- 来源：arXiv 2023
- 关键词：Amino acids - Benchmarking - Classification (of information) - Computational linguistics - Learning systems - Natural language processing systems - Transfer learning
- Bug report priority prediction using social and technical features被引量：99收藏
- 作者：Huang, Zijie Shao, Zhiqing Fan, Guisheng Yu, Huiqun Yang, Kang Zhou, Ziyi
- 机构： Department of Computer Science and Engineering
- 来源：Journal of Software: Evolution and Process 2024
- 关键词：Program debugging - Social aspects - Software engineering - Tracking (position)
- A General Temperature-Guided Language Model to Design ProtEIns of Enhanced Stability and Activity被引量：87收藏
- 作者：Jiang, Fan Li, Mingchen Dong, Jiajun Yu, Yuanxi Sun, Xinyu Wu, Banghao Huang, Jin Kang, Liqi Pei, Yufeng Zhang, Liang Wang, Shaojie Xu, Wenxue Xin, Jingyao Ouyang, Wanli Fan, Guisheng Zheng, Lirong Tan, Yang Hu, Zhiqiang Xiong, Yi Feng, Yan Yang, Guangyu Liu, Qian Song, Jie Liu, Jia Hong, Liang Tan, Pan
- 机构： School of Physics and Astronomy; Shanghai Artificial Intelligence Laboratory; School of Information Science and Engineering; Shanghai Institute for Advanced Immunochemical Studies; Guangzhou National Laboratory
- 来源：arXiv 2023
- Predicting community smells’ occurrence on individual developers by sentiments被引量：78收藏
- 作者：Huang, Zijie Shao, Zhiqing Fan, Guisheng Gao, Jianhua Zhou, Ziyi Yang, Kang Yang, Xingguang
- 机构： Department of Computer Science and Engineering; Department of Computer Science and Technology
- 来源：arXiv 2021
- 关键词：Forecasting - Odors - Open source software - Open systems - Productivity
- Software Defect Prediction via Attention-Based Recurrent Neural Network被引量：76收藏
- 作者：Fan, Guisheng Diao, Xuyang Yu, Huiqun Yang, Kang Chen, Liqiong
- 机构：East China Univ Sci & Technol;Shanghai Key Lab Comp Software Evaluating & Testi;Shanghai Inst Technol
- 来源：SCIENTIFIC PROGRAMMING 2019
- 关键词：Trees (mathematics) - Program debugging - Defects - Semantics - Software reliability - Syntactics - Forecasting - Open source software
- A Motif-Based Deep Learning Tool for the Identification of Unusual NADH-Dependent Imine Reductases被引量：73收藏
- 作者：Shen, Xin-Yuan Wu, Yu-Xuan Ma, Zhi-Feng Yi, Xiao Shi, Min Zhu, Zhen-Yu Jin, Tian Hu, Xiao-Yu Huang, Zi-Yi Gao, Yun-Fei Chen, Qi Yu, Hui-Qun Xu, Jian-He Fan, Gui-Sheng Zheng, Gao-Wei
- 机构： State Key Laboratory of Bioreactor Engineering; School of Information Science and Engineering
- 来源：SSRN 2025
- 关键词：Amination - Enzyme immobilization - Enzyme inhibition - Enzyme kinetics - Hydrolases - Lipases
- 基于Petri网的服务组合故障诊断与处理被引量：73收藏
- 作者：范贵生 虞慧群 陈丽琼 刘冬梅
- 机构：华东理工大学计算机科学与工程系;上海市计算机软件评测重点实验室;上海应用技术学院计算机科学与信息工程系
- 来源：《软件学报》 2010
- 关键词：Petri网 服务组合 故障处理 CTL(computational tree logic) 可靠性
- 摘要：通过分析服务组合的故障需求,给出服务组合故障处理的框架.该框架采用Petri网来解决服务组合的错误发现及其处理问题.重点讨论了可用服务失败、组件失败及网络故障的情况,并相应地给出了服务组合故障模型.在此基础上对故障处理模...
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- Energy and time efficient task offloading and resource allocation on the generic IoT-fog-cloud architecture被引量：67收藏
- 作者：Sun, Huaiying Yu, Huiqun Fan, Guisheng Chen, Liqiong
- 机构：East China Univ Sci & Technol;Shanghai Key Lab Comp Software Evaluating & Testi;Shanghai Engn Res Ctr Smart Energy;Shanghai Inst Technol
- 来源：PEER-TO-PEER NETWORKING AND APPLICATIONS 2020
- 关键词：IoT Cloud Fog Resource allocation Completion time Energy consumption
- 面向智能计算框架的即时缺陷预测被引量：59收藏
- 作者：Ge, Jian Yu, Hui-Qun Fan, Gui-Sheng Tang, Jian-Hao Huang, Zi-Jie
- 机构： School of Computer Science and Engineering
- 来源：[1] School of Computer Science and Engineering, East China University of Science and Technology, Shanghai, 200237, China 2023
- Retrieval-Augmented Multimodal Learning for Enzyme–Substrate Interaction Prediction Under Low-Homology Shift被引量：55收藏
- 作者：Liu, Chen Zhou, Bingxin Wang, Xinyuan Li, Ming Fan, Guisheng Hong, Liang
- 机构： School of Information Science and Engineering; Institute of Natural Sciences; School of Life Sciences and Biotechnology; Zhejiang Key Laboratory of Intelligent Education Technology and Application
- 来源：arXiv 2026
- 关键词：Biochemistry - Enzymes - Machine learning - Substrates
- Automatic Code Summarization Using Abbreviation Expansion and Subword Segmentation被引量：53收藏
- 作者：Liang, Yuguo Fan, Guisheng Yu, Huiqun Li, Mingchen Huang, Zijie
- 机构： Department of Computer Science and Engineering
- 来源：SSRN 2024
- 关键词：Codes (symbols) - Computational linguistics - Deep learning - Inference engines - Learning algorithms - Learning systems - Modeling languages - Natural language processing systems
- Temporal-Aware ddPG for Delay and Stability Optimization in Vehicular Edge Computing被引量：53收藏
- 作者：Fan, Guisheng Wang, Jiatong Zhang, Hengrun Yu, Huiqun
- 机构： East China University of Science and Technology; Shanghai Key Laboratory of Computer Software Evaluating and Testing; Shanghai Engineering Research Center of Smart Energy; Nanjing University
- 来源：IEEE Transactions on Vehicular Technology 2026
- 关键词：Computation offloading - Computation theory - Lyapunov methods - Memory architecture - Network architecture - Optimization - QueuEIng theory
- Combining Constraint Solving with Different MOEAs for Configuring Large Software Product Lines: A Case Study被引量：53收藏
- 作者：Yu, Huiqun Shi, Kai Guo, Jianmei Fan, Guisheng Yang, Xingguang Chen, Liqiong
- 机构： Department of Computer Science and Engineering; Shanghai Key Laboratory of Computer Software Evaluating and Testing; Alibaba Group; Department of Computer Science and Information Engineering
- 来源：Proceedings - International Computer Software and Applications Conference 2018
- 关键词：Codes (symbols) - Budget control - Optimization - Software design
- On the Effectiveness of Information Retrieval-Based Bug Localization on Deep Learning Frameworks: An Empirical Study被引量：50收藏
- 作者：Tang, Jianhao Fan, Guisheng Yu, Huiqun Ge, Jian Huang, Zijie
- 机构： Department of Information Science and Engineering
- 来源：SSRN 2023
- 关键词：Computer software selection and evaluation - Data mining - Deep learning - Information retrieval - Learning systems - Open source software - Quality assurance
- MedChatZH: A tuning LLM for traditional Chinese medicine consultations被引量：50收藏
- 作者：Tan, Yang Zhang, Zhixing Li, Mingchen Pan, Fei Duan, Hao Huang, Zijie Deng, Hua Yu, Zhuohang Yang, Chen Shen, Guoyang Qi, Peng Yue, Chengyuan Liu, Yuxian Hong, Liang Yu, Huiqun Fan, Guisheng Tang, Yun
- 机构： Department of Computer Science and Technology; Shanghai Frontiers Science Center of Optogenetic Techniques for Cell Metabolism; Shanghai Artificial Intelligence Laboratory; Chongqing Artificial Intelligence Research Institute of Shanghai Jiao Tong University; The University of Sydney
- 来源：Computers in Biology and Medicine 2024
- 关键词：Computational linguistics - Medicine - Speech processing
- SESNet: sequence-structure feature-integrated deep learning method for data-efficient protEIn engineering被引量：49收藏
- 作者：Li, Mingchen Kang, Liqi Xiong, Yi Wang, Yu Guang Fan, Guisheng Tan, Pan Hong, Liang
- 机构： Shanghai National Center for Applied Mathematics ; School of Physics and Astronomy; Shanghai Artificial Intelligence Laboratory; School of Information Science and Engineering; School of Life Sciences and Biotechnology
- 来源：arXiv 2022
- 关键词：Biochemical engineering - Bioinformatics - Deep learning - Forecasting - Genetic engineering - Learning systems - Semantics
- Bug Report Priority Prediction Using Developer-Oriented Socio-Technical Features被引量：48收藏
- 作者：Huang, Zijie Shao, Zhiqing Fan, Guisheng Yu, Huiqun Yang, Kang Zhou, Ziyi
- 机构： East China University of Science and Technology
- 来源：ACM International Conference Proceeding Series 2022
- 关键词：Program debugging - Social aspects - Software engineering - Tracking (position)
- SDGR: An SDN-based Geographic Routing Protocol for VANET被引量：48收藏
- 作者：Ji, Xiang Yu, HuiQun Fan, GuiSheng Fu, WenHao
- 机构：East China Univ Sci & Technol
- 来源：2016 IEEE INTERNATIONAL CONFERENCE ON INTERNET OF THINGS (ITHINGS) AND IEEE GREEN COMPUTING AND COMMUNICATIONS (GREENCOM) AND IEEE CYBER, PHYSICAL AND SOCIAL COMPUTING (CPSCOM) AND IEEE SMART DATA (SMARTDATA) 2016
- 关键词：Software-Defined Networking Vehicular ad hoc networks Map-based routing
- JIT-Align: A Semantic Alignment-Based Ranking Framework for Just-In-Time Defect Prediction被引量：48收藏
- 作者：Ye, Yujie Yu, Huiqun Fan, Guisheng Liang, Yuguo Dong, Jianan Chen, Wentao
- 机构： East China University of Science and Technology; Shanghai Engineering Research Center of Smart Energy
- 来源：Proceedings - 2025 IEEE 49th Annual Computers, Software, and Applications Conference, COMPSAC 2025 2025
- 关键词：Codes (symbols) - Defects - Forecasting - Large datasets - Prediction models - Semantics
- An Empirical Study of Model-Agnostic Interpretation Technique for Just-in-Time Software Defect Prediction被引量：48收藏
- 作者：Yang, Xingguang Yu, Huiqun Fan, Guisheng Huang, Zijie Yang, Kang Zhou, Ziyi
- 机构： Department of Computer Science and Engineering; Shanghai Key Laboratory of Computer Software Evaluating and Testing; Shanghai Engineering Research Center of Smart Energy
- 来源：Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST 2021
- 关键词：Computer software selection and evaluation - Decision making - Defects - Forecasting - Learning systems - Lime - Open source software - Quality assurance - Software design
- A Hybrid Knowledge-Grounded Framework for Safety and Traceability in Prescription Verification被引量：45收藏
- 作者：Zhu, Yichi Ling, Kan Liu, Xu Zhang, Hengrun Yu, Huiqun Fan, Guisheng
- 机构： School of Information Science and Engineering
- 来源：arXiv 2026
- 关键词：Iterative methods - Knowledge graph - Query processing - Safety engineering - Search engines
- A novel software defect prediction method based on hierarchical neural network被引量：43收藏
- 作者：Yu, Huiqun Sun, Xingjie Zhou, Ziyi Fan, Guisheng
- 机构： Shanghai Key Laboratory of Computer Software Evaluating and Testing; Department of Computer Science and Engineering
- 来源：Proceedings - 2021 IEEE 45th Annual Computers, Software, and Applications Conference, COMPSAC 2021 2021
- 关键词：Open source software - Syntactics - Textures - Defects - Trees (mathematics) - Deep learning - Codes (symbols) - Forecasting - Semantics - Software testing
- imBBO: An Improved Biogeography-Based Optimization Algorithm被引量：43收藏
- 作者：Shi, Kai Yu, Huiqun Fan, Guisheng Yang, Xingguang Song, Zheng
- 机构： Department of Computer Science and Engineering; Shanghai Key Laboratory of Computer Software Evaluating and Testing; The Third Research Institute of the Ministry of Public Security
- 来源：Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
- 关键词：Genetic algorithms - Heuristic algorithms - Ecology - Benchmarking
- Automatic Identification of High Impact Bug Report by Test Smells of Textual Similar Bug Reports被引量：41收藏
- 作者：Ding, Jianshu Fan, Guisheng Yu, Huiqun Huang, Zijie
- 机构： East China University of Science and Technology
- 来源：IEEE International Conference on Software Quality, Reliability and Security, QRS 2021
- 关键词：Automation - Computer software selection and evaluation - Odors - Optimal systems - Program debugging - Quality assurance
- Deep Semantic Feature Learning with Embedded Static Metrics for Software Defect Prediction被引量：37收藏
- 作者：Fan, Guisheng Diao, Xuyang Yu, Huiqun Yang, Kang Chen, Liqiong
- 机构： Department of Computer Science and Engineering; Department of Computer Science and Information Engineering
- 来源：Proceedings - Asia-Pacific Software Engineering Conference, APSEC 2019
- 关键词：Program debugging - Defects - Syntactics - Trees (mathematics) - Software testing - Open source software - Recurrent neural networks - Forecasting
- VFProber: A Vulnerability-Fixing Identification Framework Based on Code Changes and Semantic Adjustment被引量：36收藏
- 作者：Dong, Jianan Fan, Guisheng Yu, Yueming Liang, Yuguo Ye, Yujie Yu, Huiqun Chen, Wentao
- 机构： East China University of Science and Technology; Shanghai Engineering Research Center of Smart Energy; Shanghai Data Exchange Corporation
- 来源：Proceedings - 2025 IEEE 49th Annual Computers, Software, and Applications Conference, COMPSAC 2025 2025
- 关键词：Codes (symbols) - Computer programming languages - Computer software - Learning systems - Natural language processing systems - Semantics
- Contract-Based Resource Sharing for Time Effective Task Scheduling in Fog-Cloud Environment被引量：36收藏
- 作者：Sun, Huaiying Yu, Huiqun Fan, Guisheng
- 机构：East China Univ Sci & Technol;Shanghai Key Lab Comp Software Evaluating & Testi
- 来源：IEEE TRANSACTIONS ON NETWORK AND SERVICE MANAGEMENT 2020
- 关键词：Cloud computing Task analysis Resource management Edge computing Computational modeling Delays Energy consumption IoT-fog-cloud time requirement resource sharing mobility contract establishment
- A Regression Test Case Prioritization Algorithm Based on Program Changes and Method Invocation Relationship被引量：36收藏
- 作者：Fu, Wenhao Yu, Huiqun Fan, Guisheng Ji, Xiang Pei, Xin
- 机构： Department of Computer Science and Engineering; Shanghai Key Laboratory of Computer Software Evaluating and Testing; Third Research Institute
- 来源：Proceedings - Asia-Pacific Software Engineering Conference, APSEC 2017
- 关键词：Risk perception - Regression analysis - Integer programming - Software testing
- License Compatibility Detection for OpenJavaWorks Open-Source Projects Based on Code Similarity被引量：35收藏
- 作者：Wang, Xiaotong Yu, Huiqun Fan, Guisheng Liang, Yuguo Chen, Wentao Liu, Jingyi
- 机构： East China University of Science and Technology; Shanghai Engineering Research Center of Smart Energy
- 来源：Proceedings - 2025 IEEE 49th Annual Computers, Software, and Applications Conference, COMPSAC 2025 2025
- 关键词：Codes (symbols) - Computer software reusability - Information management - Information systems - Open source software - Open systems
- A general temperature-guided language model to design protEIns of enhanced stability and activity被引量：35收藏
- 作者：Jiang, Fan Li, Mingchen Dong, Jiajun Yu, Yuanxi Sun, Xinyu Wu, Banghao Huang, Jin Kang, Liqi Pei, Yufeng Zhang, Liang Wang, Shaojie Xu, Wenxue Xin, Jingyao Ouyang, Wanli Fan, Guisheng Zheng, Lirong Tan, Yang Hu, Zhiqiang Xiong, Yi Feng, Yan Yang, Guangyu Liu, Qian Song, Jie Liu, Jia Hong, Liang Tan, Pan
- 机构：Shanghai Jiao Tong Univ;Shanghai Jiao Tong Univ;Shanghai Jiao Tong Univ;Shanghai Artificial Intelligence Lab;East China Univ Sci & Technol
- 来源：SCIENCE ADVANCES 2024
- 关键词：Antigen-antibody reactions - Antigens
