文献类型：期刊文献

中文题名：一种时序信号分类算法在纳米孔道离子电流信号识别中的应用

英文题名：A Time-Series Signal Classification Algorithm and Its Application to Nanopore Ionic Current Signal Identification

作者：倪雪[1];辛凯莉[2];胡正利[2];蒋翠玲[1];万永菁[1];应佚伦[2];龙亿涛[2]

机构：[1]华东理工大学信息科学与工程学院,上海200237;[2]南京大学化学化工学院分子传感与成像中心,南京210023

年份：2023

卷号：81

期号：8

起止页码：912

中文期刊名：化学学报

外文期刊名：Acta Chimica Sinica

收录：CSTPCD;;Scopus;WOS:【SCI-EXPANDED(收录号:WOS:001071604900007)】；北大核心:【北大核心2020】；CSCD:【CSCD2023_2024】；

基金：Project supported by the Ministry of Science and Technology Key R&D Program of China (No. 2022YFA1304604) and the National Natural Science Foundation of China (Nos. 22106066, 22027806).

语种：中文

中文关键词：纳米孔道分析;时序信号;深层特征提取;层间特征融合;可信统计预测

外文关键词：nanopore analysis;time-series signal;deep feature extraction;inter-layer feature fusion;credible statistical predictions

摘要：纳米孔道单分子分析技术通常利用阻断电流的时域特征进行识别.但对于结构、分子量等相似的物质,由于其时域特性交叠,采用传统的纳米孔道识别方法难以准确分辨.为了充分挖掘具有差异性的深层特征,提升纳米孔道离子流信号识别准确率,提出了一种时序信号分类算法.通过有重叠的滑动窗口对原始信号进行分帧,并利用连续小波变换对逐帧信号进行处理,可准确获取单分子事件的时频域浅层特征信息.在此基础上,利用多分支层间特征融合网络处理获取深层特征.采用可信统计预测策略对子信号的分类概率统计,该算法对单氨基酸差异多肽的纳米孔道离子电流信号的识别准确率高达99.00%,可显著提高纳米孔道对分子量相似甚至相同的单分子的传感能力.
Nanopore-based single molecular analysis technique usually uses time-domain features such as time-current scatter plots of blocking currents for event recognition.However,as the time-domain features overlap with each other,the substances with extremely similar molecular structures are difficult to be accurately discriminated using traditional nanopore recognition methods.The differences in the deep feature representations need fully explored to obtain credible recognition results,thus improving the recognition accuracy of nanopore ionic current signals.Here,a time-series signal classification algorithm is proposed in this paper:firstly,the original signal is framed with overlapping sliding windows to generate sub-signals and extract their shallow feature information;then a time-series signal classification network based on Emphasized Channel Attention,Propagation and Aggregation in time delay neural network(ECAPA-TDNN)is proposed to develop a multi-branch inter-layer feature fusion model for deep feature extraction,where the multi-branch multi-level attention module of this model(RepVGG-SE-Res2Block,RSR-Block)obtains multi-scale features by constructing a feature pyramid structure within each residual block,reduces the inference speed based on structural reparameterization techniques while ensuring the model performance,and introduces Adaptively Spatial Feature Fusion(ASFF)to fuse the features of different layers in the network;finally,a credible statistical prediction strategy is used to obtain reliable classification results by counting the classification probabilities of sub-signals.The experimental results show that for the peptide sequences N'-DDFFIFFDD-C'(DF_I)and N'-DDFFLFFDD-C'(DF_L)containing only the different amino acids I(isoleucine)and L(leucine),which are isomers of each other,the algorithm achieves a recognition accuracy of 99.00%,obviously improving the sensing capability of nanopores for single molecules with similar or even identical molecular weights.