文献类型：期刊文献

中文题名：Comprehensive reconstruction and evaluation of Pichia pastoris genome-scale metabolic model that accounts for 1243 ORFs

作者：Rui Ye[1];Mingzhi Huang[1];Hongzhong Lu[1];Jiangchao Qian[1];Weilu Lin[1];Ju Chu[1];Yingping Zhuang[1];Siliang Zhang[1]

机构：[1]State Key Laboratory of Bioreactor Engineering,East China University of Science and Technology,No.130,Meilong Road,Shanghai 200237,China

年份：2017

卷号：4

期号：1

起止页码：370

中文期刊名：Bioresources and Bioprocessing

外文期刊名：生物资源与生物加工(英文)

基金：National Basic Research Program of China(No.2013CB733600);National Natural Science Foundation of China(No.201276081);National Key Technology Support Program of China(No.2011BAF02B05).

语种：英文

中文关键词：Genome-scale metabolic model;Pichia pastoris;Multi-omics;β-Galactosidase

摘要：Background:Pichia pastoris is one of the most important cell factories for production of industrial enzymes and heterogenous proteins.The genome-scale metabolic model of high quality is crucial for comprehensive understanding of the P.pastoris metabolism.Methods:In this paper,we upgraded P.pastoris genome-scale metabolic model based on the combination of latest genome annotations and literatures.Then the performance of the new model was evaluated using the Cobra Toolbox v2.0.Results:Compared with the recently published model iMT1026,the reaction number in the new model iRY1243 was increased from 2035 to 2407 and the metabolite number was increased from 1018 to 1094.Accordingly,the unique ORF number was increased from 1026 to 1243.To improve the metabolic functions of P.pastoris genomescale metabolic model,the biosynthesis pathways of vitamins and cofactors were carefully added.iRY1243 showed good performances when predicting the growth capability on most of the reported carbon and nitrogen sources,the metabolic flux distribution with glucose as a sole carbon source,the essential and partially essential genes,and the effects of gene deletion or overexpression on cell growth and S-adenosyl-l-methionine production.Conclusion:iRY1243 is an upgraded P.pastoris genome-scale metabolic model with significant improvements in the metabolic coverage and prediction ability,and thus it will be a potential platform for further systematic investigation of P.pastoris metabolism.